2024 session
The CIBiG’ team is happy to welcome its first cohort, from September 3 to October 4, 2024. The training will take place at WAVE, located at the P le Scientifique et d’Innovation of University F lix Houphou t-Boigny (Bingerville).
Language
The course will be in French, but the slides and other course material will be in English.
Online learning classes
introductory courses (12h) - September 3 and 4, 2024.
- Tuesday - 9:00 am - 5:15 pm
| Time | Course name | Teachers |
|---|---|---|
| 9:00 - 10:30 | General biology reminders on microorganisms (e.g. bacteria, viruses) | Prof. Fidèle Tiendrebeogo |
| 10 min break | ||
| 10:45 - 12:15 | General biology reminders on eukaryotes | Prof. Romaric Nanema |
| LUNCH | ||
| 2:00 - 3:30 | Structure and variations of genomes | Prof. Fran ois Sabot |
| 10 min break | ||
| 3:45 - 5:15 | NGS sequencing methods | Prof. François Sabot |
| Practical exercise |
- Wednesday - 9:00 am - 5:15 pm
| Time | Course name | Teachers |
|---|---|---|
| 9:00 - 10:30 | Discussion on the evening exercise and feedback/questions about the previous day’s lessons | Prof. Fidèle Tiendrebeogo, Prof. Romaric Nanema and Prof. Francois Sabot |
| 10 min break | ||
| 10:45 - 12:15 | Applications of NGS technologies | Prof. Fran ois Sabot |
| LUNCH | ||
| 2:00 - 3:30 | Mendelian genetics | Prof. Romaric Nanema |
| 10 min break | ||
| 3:45 - 5:15 | General discussion over the two days, reflections on the results observed | Prof. Fidèle Tiendrebeogo, Prof. Romaric Nanema and Prof. François Sabot |
Face to face classes
Numerous modules from computer science to bioinformatics (154 h) - September 9-October 4, 2024
Timetables
Program structure
| Code | Course name | Main Teachers | Helpers | Course Material |
|---|---|---|---|---|
| ONLINE | Course review | R. Nanema, F. Tiendrebeogo, F. Sabot | ||
| SEQUENCING | Sequencing: from library preparation to sequencing (30h) | M. Bangratz, M. Couderc | ||
| BANK | Biological database | A. Dereeper, E. Tibiri | C. Tranchant | Course Exercises |
| LINUX1 | Linux Level 1 | E. Tibiri, C. Tranchant | M. Couderc, A. Dereeper | |
| LINUX 2 | Linux Level 2 | E. Tibiri, C. Tranchant | M. Couderc, A. Dereeper | |
| BIOANALYSIS | Practice | A. Dereeper, J. Orjuela, C. Tranchant, E. Tibiri | ||
| BIOANALYSIS | Group project | A. Dereeper, J. Orjuela, C. Tranchant, E. Tibiri, R. Boua,, S. Cunnac, S. Ravel, R. Nanema, F. Tiendrebeogo | ||
| ALGO | Introduction to Algorithmics | J. Orjuela, C. Tranchant | S. Cunnac | |
| R | Data analysis and visualization in R | S. Cunnac, J. Orjuela | E. Tibiri | |
| LINUX - slurm | Linux - slurm | N. Tando, S. Anoman | J. Orjuela | |
| PYTHON | Python programming | J. Orjuela, S.Ravel | E. Tibiri, C. Tranchant | |
| REPROD -overview | Science reproductibility - overview | E. Tibiri | J. Orjuela, C. Tranchant | |
| REPROD - conda | Science reproductibility - conda, singularity | N. Tando, S. Anoman, Julie Orjuela, S. Ravel | E. Tibiri | |
| REPROD - git | Science reproductibility - git | J. Orjuela, C. Tranchant | S. Ravel, E. Tibiri | |
| REPROD - snakemake | Science reproductibility - snakemake | S. Ravel, J. Orjuela | E. Tibiri, C. Tranchant |